Variant report

Variant	rs16929672
Chromosome Location	chr12:26088741-26088742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26088715..26091033-chr12:26109828..26112264,2	MCF-7	breast:
2	chr12:26088641..26091375-chr12:26093087..26096585,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123094	Chromatin interaction
ENSG00000246695	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1495651	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1495652	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1495653	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16915727	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16929640	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4439604	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4963944	0.90[GIH][hapmap];0.86[MEX][hapmap]
rs55768874	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55822181	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55824313	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55927160	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56085129	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56197916	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57063200	0.94[EUR][1000 genomes]
rs73073006	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73073026	0.94[EUR][1000 genomes]
rs73073030	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073040	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073041	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073043	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073046	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073052	0.94[EUR][1000 genomes]
rs73073060	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073068	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073072	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73073078	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073083	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073087	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073092	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073093	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73073094	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73074828	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074846	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73088140	0.83[EUR][1000 genomes]
rs73088152	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs864916	1.00[CEU][hapmap];0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26085400-26110600	Weak transcription	Aorta	Aorta
2	chr12:26086800-26089200	Weak transcription	Ovary	ovary
3	chr12:26086800-26095000	Weak transcription	NHDF-Ad	bronchial
4	chr12:26086800-26110600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:26087800-26090000	Weak transcription	Fetal Lung	lung
6	chr12:26088400-26089400	Enhancers	Fetal Heart	heart
7	chr12:26088400-26089400	Enhancers	HSMMtube	muscle
8	chr12:26088600-26088800	Enhancers	Placenta	Placenta
9	chr12:26088600-26089600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr12:26088600-26090200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:26088600-26090600	Enhancers	Brain Anterior Caudate	brain
12	chr12:26088600-26091200	Enhancers	Fetal Kidney	kidney

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