Variant report
| Variant | rs73073026 |
|---|---|
| Chromosome Location | chr12:26065327-26065328 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1495651 | 0.98[EUR][1000 genomes] |
| rs1495652 | 0.98[EUR][1000 genomes] |
| rs1495653 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs16915727 | 0.98[EUR][1000 genomes] |
| rs16929640 | 0.98[EUR][1000 genomes] |
| rs16929672 | 0.94[EUR][1000 genomes] |
| rs4439604 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs55768874 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55822181 | 0.98[EUR][1000 genomes] |
| rs55824313 | 0.98[EUR][1000 genomes] |
| rs55927160 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56085129 | 0.98[EUR][1000 genomes] |
| rs56197916 | 0.98[EUR][1000 genomes] |
| rs57063200 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73073006 | 0.97[EUR][1000 genomes] |
| rs73073025 | 0.84[AFR][1000 genomes] |
| rs73073030 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73073040 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73073041 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73073043 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73073046 | 0.98[EUR][1000 genomes] |
| rs73073052 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73073060 | 0.98[EUR][1000 genomes] |
| rs73073068 | 0.98[EUR][1000 genomes] |
| rs73073072 | 0.94[EUR][1000 genomes] |
| rs73073078 | 0.98[EUR][1000 genomes] |
| rs73073083 | 0.98[EUR][1000 genomes] |
| rs73073087 | 0.98[EUR][1000 genomes] |
| rs73073092 | 0.98[EUR][1000 genomes] |
| rs73073093 | 0.98[EUR][1000 genomes] |
| rs73073094 | 0.97[EUR][1000 genomes] |
| rs73074828 | 0.97[EUR][1000 genomes] |
| rs73074846 | 0.93[EUR][1000 genomes] |
| rs73088140 | 0.84[EUR][1000 genomes] |
| rs73088152 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758300 | chr12:25992331-26161116 | Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 38 gene(s) | inside rSNPs | diseases |
| 2 | esv2759886 | chr12:25992331-26161116 | Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv1035319 | chr12:26020667-26097148 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:26050400-26076800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
