Variant report

Variant	rs73088140
Chromosome Location	chr12:26045495-26045496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1495651	0.85[EUR][1000 genomes]
rs1495652	0.85[EUR][1000 genomes]
rs1495653	0.85[EUR][1000 genomes]
rs16915727	0.85[EUR][1000 genomes]
rs16929640	0.85[EUR][1000 genomes]
rs16929672	0.83[EUR][1000 genomes]
rs4439604	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs55768874	0.84[EUR][1000 genomes]
rs55822181	0.85[EUR][1000 genomes]
rs55824313	0.85[EUR][1000 genomes]
rs55927160	0.85[EUR][1000 genomes]
rs56085129	0.85[EUR][1000 genomes]
rs56197916	0.85[EUR][1000 genomes]
rs57063200	0.84[EUR][1000 genomes]
rs73073006	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73073026	0.84[EUR][1000 genomes]
rs73073030	0.85[EUR][1000 genomes]
rs73073040	0.85[EUR][1000 genomes]
rs73073041	0.85[EUR][1000 genomes]
rs73073043	0.85[EUR][1000 genomes]
rs73073046	0.85[EUR][1000 genomes]
rs73073052	0.84[EUR][1000 genomes]
rs73073060	0.85[EUR][1000 genomes]
rs73073068	0.85[EUR][1000 genomes]
rs73073072	0.84[EUR][1000 genomes]
rs73073078	0.85[EUR][1000 genomes]
rs73073083	0.85[EUR][1000 genomes]
rs73073087	0.85[EUR][1000 genomes]
rs73073092	0.85[EUR][1000 genomes]
rs73073093	0.85[EUR][1000 genomes]
rs73073094	0.84[EUR][1000 genomes]
rs73074828	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73074846	0.82[EUR][1000 genomes]
rs73088152	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26045000-26049800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:26045200-26045600	ZNF genes & repeats	NHEK	skin
3	chr12:26045400-26049800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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