Variant report

Variant	rs73074846
Chromosome Location	chr12:26091696-26091697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1495651	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1495652	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1495653	0.94[EUR][1000 genomes]
rs16915727	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16929640	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16929672	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4439604	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55768874	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55822181	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55824313	0.94[EUR][1000 genomes]
rs55927160	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56085129	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56197916	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57063200	0.93[EUR][1000 genomes]
rs73073006	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73073026	0.93[EUR][1000 genomes]
rs73073030	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073040	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073041	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073043	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073046	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073052	0.93[EUR][1000 genomes]
rs73073060	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073068	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073072	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73073078	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073083	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073087	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073092	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073093	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73073094	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73074828	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074867	0.80[AFR][1000 genomes]
rs73088140	0.82[EUR][1000 genomes]
rs73088152	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26085400-26110600	Weak transcription	Aorta	Aorta
2	chr12:26086800-26095000	Weak transcription	NHDF-Ad	bronchial
3	chr12:26086800-26110600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26090200-26092000	Weak transcription	Ovary	ovary
5	chr12:26090200-26110200	Weak transcription	Brain Substantia Nigra	brain
6	chr12:26090400-26107800	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:26090800-26091800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:26090800-26092800	Enhancers	Placenta	Placenta
9	chr12:26091000-26107000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr12:26091400-26110000	Weak transcription	Psoas Muscle	Psoas
11	chr12:26091600-26092200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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