Variant report

Variant	rs16929901
Chromosome Location	chr12:26168644-26168645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10505987	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs11834328	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11836838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs12304002	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12317401	0.80[EUR][1000 genomes]
rs16929800	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16929810	0.82[JPT][hapmap]
rs16929935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16929938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16929948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16929953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16930044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16930123	0.82[EUR][1000 genomes]
rs1986803	0.96[EUR][1000 genomes]
rs7134859	0.82[EUR][1000 genomes]
rs7310724	0.82[JPT][hapmap]
rs7315080	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs931583	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26160600-26170400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:26160600-26170600	Weak transcription	Fetal Intestine Small	intestine
3	chr12:26160600-26171600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26163600-26170400	Weak transcription	Pancreas	Pancrea
5	chr12:26164200-26170400	Weak transcription	Brain Angular Gyrus	brain
6	chr12:26164400-26170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:26164600-26170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:26164600-26170400	Weak transcription	Brain Anterior Caudate	brain
9	chr12:26164600-26171600	Weak transcription	NH-A	brain
10	chr12:26164800-26168800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:26164800-26169000	Weak transcription	Fetal Lung	lung
12	chr12:26164800-26169200	Weak transcription	NHLF	lung
13	chr12:26164800-26170400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:26164800-26170400	Weak transcription	Adipose Nuclei	Adipose
15	chr12:26164800-26170400	Weak transcription	Aorta	Aorta
16	chr12:26164800-26170400	Weak transcription	Left Ventricle	heart
17	chr12:26164800-26170400	Weak transcription	Lung	lung
18	chr12:26164800-26170400	Weak transcription	Ovary	ovary
19	chr12:26164800-26170400	Weak transcription	Psoas Muscle	Psoas
20	chr12:26164800-26170400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr12:26164800-26170400	Weak transcription	Hela-S3	cervix
22	chr12:26164800-26170400	Weak transcription	HSMM	muscle
23	chr12:26164800-26170400	Weak transcription	NHEK	skin
24	chr12:26164800-26170600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:26164800-26173200	Weak transcription	HMEC	breast
26	chr12:26165000-26169200	Weak transcription	HUVEC	blood vessel
27	chr12:26165000-26169400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr12:26165000-26171600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr12:26165200-26171400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr12:26166200-26170400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr12:26167200-26170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr12:26167200-26170400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr12:26167200-26170400	Weak transcription	Brain Substantia Nigra	brain
34	chr12:26167200-26170400	Weak transcription	Gastric	stomach
35	chr12:26167200-26170400	Weak transcription	Right Atrium	heart
36	chr12:26167200-26174200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:26167400-26168800	Weak transcription	NHDF-Ad	bronchial
38	chr12:26167400-26169000	Weak transcription	Brain Hippocampus Middle	brain
39	chr12:26167400-26169200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr12:26167400-26169400	Weak transcription	Osteobl	bone
41	chr12:26167400-26170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr12:26167400-26170400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr12:26167400-26170400	Weak transcription	Colon Smooth Muscle	Colon
44	chr12:26167400-26170400	Weak transcription	Fetal Heart	heart
45	chr12:26167400-26170400	Weak transcription	Right Ventricle	heart
46	chr12:26167400-26170400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr12:26167400-26170400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr12:26167400-26171600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr12:26167400-26180600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr12:26168200-26168800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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