Variant report

Variant	rs16929948
Chromosome Location	chr12:26197262-26197263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10505987	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11834328	0.91[EUR][1000 genomes]
rs11836838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12304002	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16929800	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs16929810	0.82[JPT][hapmap]
rs16929901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16929935	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929938	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929953	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs16930123	0.86[EUR][1000 genomes]
rs1986803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134859	0.86[EUR][1000 genomes]
rs7310724	0.82[JPT][hapmap]
rs7315080	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs931583	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
2	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
5	chr12:26194600-26199000	Enhancers	NHDF-Ad	bronchial
6	chr12:26194800-26198600	Enhancers	NH-A	brain
7	chr12:26194800-26199000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr12:26195000-26197600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:26195000-26197600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr12:26195200-26197600	Enhancers	Fetal Lung	lung
11	chr12:26195200-26197800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr12:26195200-26201200	Enhancers	Colon Smooth Muscle	Colon
13	chr12:26195600-26198400	Weak transcription	HSMM	muscle
14	chr12:26195600-26198600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:26195600-26200600	Weak transcription	HUVEC	blood vessel
16	chr12:26196000-26197800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:26196000-26199000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:26196200-26197400	Enhancers	Fetal Brain Male	brain
19	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:26196400-26199800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr12:26196400-26200400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr12:26196400-26200400	Weak transcription	Fetal Muscle Leg	muscle
23	chr12:26196400-26200600	Weak transcription	Fetal Heart	heart
24	chr12:26196400-26201000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
26	chr12:26196600-26200400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr12:26196600-26200400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr12:26196600-26200400	Weak transcription	Lung	lung
29	chr12:26196600-26200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:26196800-26197400	Weak transcription	Brain Substantia Nigra	brain
31	chr12:26196800-26197600	Enhancers	Adipose Nuclei	Adipose
32	chr12:26196800-26197800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr12:26196800-26199800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr12:26196800-26200400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr12:26196800-26200400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr12:26196800-26200800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr12:26196800-26201400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:26197000-26197600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:26197000-26198400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr12:26197000-26198600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr12:26197000-26198800	Enhancers	Osteobl	bone
42	chr12:26197000-26200000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr12:26197000-26200400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr12:26197000-26201600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr12:26197200-26197400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr12:26197200-26197600	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr12:26197200-26197800	Enhancers	Brain Angular Gyrus	brain
49	chr12:26197200-26198000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr12:26197200-26198200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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