Variant report

Variant	rs16929935
Chromosome Location	chr12:26194782-26194783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10505987	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11834328	0.91[EUR][1000 genomes]
rs11836838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12304002	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16929800	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs16929810	0.82[JPT][hapmap]
rs16929901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16929938	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929953	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs16930123	0.86[EUR][1000 genomes]
rs1986803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134859	0.86[EUR][1000 genomes]
rs7310724	0.82[JPT][hapmap]
rs7315080	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs931583	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26180800-26195000	Weak transcription	HSMM	muscle
2	chr12:26181000-26195200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
5	chr12:26186200-26195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:26187800-26194800	Weak transcription	HUVEC	blood vessel
10	chr12:26188000-26195200	Weak transcription	Fetal Kidney	kidney
11	chr12:26188200-26194800	Weak transcription	NH-A	brain
12	chr12:26189200-26194800	Weak transcription	Hela-S3	cervix
13	chr12:26191000-26195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:26191000-26195400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:26191000-26196000	Weak transcription	Ovary	ovary
16	chr12:26191200-26195000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr12:26191200-26195000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:26191200-26195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr12:26191400-26195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr12:26191400-26196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:26192200-26195000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:26192400-26195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:26192400-26195000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr12:26192400-26195200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:26192400-26195200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:26192400-26195200	Weak transcription	Colon Smooth Muscle	Colon
27	chr12:26192400-26195800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr12:26192400-26195800	Weak transcription	Psoas Muscle	Psoas
29	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr12:26192400-26196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:26192600-26195000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr12:26193400-26194800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr12:26193400-26195200	Weak transcription	Brain Hippocampus Middle	brain
36	chr12:26193600-26194800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr12:26193600-26195000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr12:26193600-26195000	Weak transcription	Brain Anterior Caudate	brain
39	chr12:26193600-26195200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr12:26193600-26195400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr12:26193600-26195800	Weak transcription	Aorta	Aorta
42	chr12:26193600-26195800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr12:26193600-26196000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr12:26193600-26196000	Weak transcription	Brain Angular Gyrus	brain
45	chr12:26193600-26196000	Weak transcription	Brain Substantia Nigra	brain
46	chr12:26193600-26196000	Weak transcription	Lung	lung
47	chr12:26193600-26196200	Weak transcription	Right Atrium	heart
48	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
49	chr12:26193800-26195200	Weak transcription	Fetal Lung	lung
50	chr12:26194400-26196800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links