Variant report

Variant	rs16929938
Chromosome Location	chr12:26195222-26195223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10505987	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11834328	0.91[EUR][1000 genomes]
rs11836838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12304002	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16929800	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs16929810	0.82[JPT][hapmap]
rs16929901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16929935	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929953	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs16930123	0.86[EUR][1000 genomes]
rs1986803	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134859	0.86[EUR][1000 genomes]
rs7310724	0.82[JPT][hapmap]
rs7315080	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs931583	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
3	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:26191000-26195400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:26191000-26196000	Weak transcription	Ovary	ovary
8	chr12:26191400-26195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr12:26191400-26196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:26192400-26195800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:26192400-26195800	Weak transcription	Psoas Muscle	Psoas
12	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:26192400-26196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:26193600-26195400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:26193600-26195800	Weak transcription	Aorta	Aorta
18	chr12:26193600-26195800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr12:26193600-26196000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr12:26193600-26196000	Weak transcription	Brain Angular Gyrus	brain
21	chr12:26193600-26196000	Weak transcription	Brain Substantia Nigra	brain
22	chr12:26193600-26196000	Weak transcription	Lung	lung
23	chr12:26193600-26196200	Weak transcription	Right Atrium	heart
24	chr12:26193600-26200600	Weak transcription	Left Ventricle	heart
25	chr12:26194400-26196800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:26194600-26195400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr12:26194600-26195600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:26194600-26196400	Enhancers	Osteobl	bone
29	chr12:26194600-26196800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:26194600-26199000	Enhancers	NHDF-Ad	bronchial
31	chr12:26194800-26195600	Enhancers	HUVEC	blood vessel
32	chr12:26194800-26196400	Enhancers	Hela-S3	cervix
33	chr12:26194800-26196600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr12:26194800-26196600	Enhancers	NHLF	lung
35	chr12:26194800-26197200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:26194800-26198600	Enhancers	NH-A	brain
37	chr12:26194800-26199000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr12:26195000-26195600	Enhancers	HSMM	muscle
39	chr12:26195000-26196000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:26195000-26196000	Enhancers	Brain Anterior Caudate	brain
41	chr12:26195000-26196200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr12:26195000-26196800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr12:26195000-26197000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:26195000-26197000	Enhancers	Stomach Smooth Muscle	stomach
45	chr12:26195000-26197000	Enhancers	A549	lung
46	chr12:26195000-26197200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr12:26195000-26197200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr12:26195000-26197200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr12:26195000-26197200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr12:26195000-26197200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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