Variant report

Variant	rs16931334
Chromosome Location	chr8:65504370-65504371
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1007219	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs10098006	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs13260351	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs13282866	0.83[ASW][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap]
rs16931331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3779870	0.85[ASW][hapmap]
rs3779874	0.82[MEX][hapmap];0.88[TSI][hapmap]
rs4297065	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs4301481	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs4350019	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs7002672	0.81[JPT][hapmap]
rs7008736	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs7837935	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs7841297	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs9298086	0.80[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16931334	CYP7B1	cis	cerebellum	SCAN
rs16931334	CYP7B1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65500600-65526800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:65502000-65506600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:65503600-65514400	Weak transcription	Fetal Lung	lung
5	chr8:65503600-65538400	Weak transcription	Fetal Kidney	kidney
6	chr8:65504200-65512200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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