Variant report

Variant	rs7008736
Chromosome Location	chr8:65543401-65543402
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1007219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10087071	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10098006	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs13260351	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13282866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16931334	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs28679790	0.82[EUR][1000 genomes]
rs4236934	0.82[EUR][1000 genomes]
rs4297065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4301481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4327886	0.82[EUR][1000 genomes]
rs4350019	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4737193	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7002672	0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7005708	0.82[EUR][1000 genomes]
rs7837935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7841297	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs9298086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9643389	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv611449	chr8:65511032-65543401	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv6231	chr8:65538593-65583623	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65536200-65547600	Weak transcription	Liver	Liver
3	chr8:65542200-65543600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:65542200-65543600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:65542200-65543600	Enhancers	NHEK	skin
6	chr8:65542200-65543800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:65542200-65543800	Enhancers	HMEC	breast
8	chr8:65542400-65543600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:65542400-65543600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:65542400-65543600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:65542400-65543600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:65542400-65543800	Enhancers	Primary hematopoietic stem cells	blood
13	chr8:65542400-65543800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:65542600-65543600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr8:65543000-65543800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr8:65543200-65543800	Flanking Active TSS	GM12878-XiMat	blood
17	chr8:65543400-65547400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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