Variant report

Variant	rs9298086
Chromosome Location	chr8:65535398-65535399
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1007219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10087071	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs10098006	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10105184	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10112206	0.83[MEX][hapmap]
rs10808738	0.94[ASW][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11986615	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11998077	0.83[MEX][hapmap];0.89[TSI][hapmap]
rs12681856	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13260351	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13282866	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16931334	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs4297065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4301481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4350019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4395923	0.94[ASW][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs4406437	0.83[MEX][hapmap];0.89[TSI][hapmap]
rs4437694	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4452822	0.94[ASW][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4532631	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4549814	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4581093	0.94[ASW][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6999999	0.83[ASW][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7002672	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs7008736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7827287	0.83[MEX][hapmap]
rs7837935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7841297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9298087	0.88[ASW][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9298088	0.88[ASW][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv611449	chr8:65511032-65543401	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65503600-65538400	Weak transcription	Fetal Kidney	kidney
3	chr8:65517200-65540000	Weak transcription	Fetal Stomach	stomach
4	chr8:65517200-65540200	Weak transcription	Fetal Lung	lung
5	chr8:65517400-65535400	Weak transcription	Brain Anterior Caudate	brain
6	chr8:65517400-65540800	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:65523200-65542400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:65527800-65542400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:65528000-65537600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:65530000-65539800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:65535200-65536200	Strong transcription	Liver	Liver
12	chr8:65535200-65536200	Strong transcription	Ovary	ovary
13	chr8:65535200-65542200	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links