Variant report

Variant	rs7002672
Chromosome Location	chr8:65606916-65606917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1007219	0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10087071	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10098006	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs13260351	0.90[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap]
rs13282866	0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs16931334	0.81[JPT][hapmap]
rs4297065	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4301481	0.90[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs4350019	0.90[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap]
rs61146973	0.92[ASN][1000 genomes]
rs6472148	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7008736	0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7815372	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs7837935	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7841297	0.90[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.82[ASN][1000 genomes]
rs9298086	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs9643389	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65603800-65608200	Weak transcription	Fetal Kidney	kidney
2	chr8:65604400-65610000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:65604600-65607400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:65604600-65607600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:65604800-65607600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:65605000-65607600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:65605200-65607600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:65605600-65615200	Weak transcription	Aorta	Aorta
9	chr8:65605800-65607600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:65606000-65607600	Weak transcription	Gastric	stomach
11	chr8:65606000-65607600	Weak transcription	Right Ventricle	heart
12	chr8:65606000-65608000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:65606000-65608600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:65606000-65610000	Weak transcription	Left Ventricle	heart
15	chr8:65606000-65612600	Weak transcription	Pancreas	Pancrea
16	chr8:65606000-65612600	Weak transcription	Spleen	Spleen
17	chr8:65606200-65607600	Weak transcription	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links