Variant report

Variant	rs16938768
Chromosome Location	chr8:49695492-49695493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49694708..49697435-chr8:49704058..49706751,2	MCF-7	breast:
2	chr8:49692576..49695901-chr8:49698756..49701661,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1023768	1.00[CHD][hapmap]
rs11984867	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11990439	0.91[AMR][1000 genomes]
rs11991055	0.82[AMR][1000 genomes]
rs11991779	0.91[AMR][1000 genomes]
rs11992261	0.91[AMR][1000 genomes]
rs11994469	1.00[ASW][hapmap];0.88[GIH][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes]
rs11997496	0.91[YRI][hapmap]
rs16938757	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756	1.00[ASW][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes]
rs3891522	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55988643	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56109904	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56179259	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56290318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58596858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59320109	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60378087	0.82[AMR][1000 genomes]
rs73678171	0.82[AMR][1000 genomes]
rs73678197	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:49686600-49700400	Weak transcription	Esophagus	oesophagus
3	chr8:49690600-49701200	Weak transcription	Ovary	ovary
4	chr8:49691000-49700400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49691200-49705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:49691400-49695600	Weak transcription	Fetal Kidney	kidney
7	chr8:49691400-49699800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:49691600-49699200	Weak transcription	Fetal Lung	lung
9	chr8:49693400-49695600	Weak transcription	Right Atrium	heart
10	chr8:49693400-49698800	Weak transcription	Adipose Nuclei	Adipose
11	chr8:49693400-49699000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:49693800-49701200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:49694400-49700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:49694800-49700400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:49694800-49700400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:49695400-49696200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:49695400-49696400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:49695400-49697600	Weak transcription	Fetal Brain Male	brain

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