Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49657699..49660104-chr8:49660800..49663399,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11984867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11990439	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991055	0.90[AMR][1000 genomes]
rs11991779	1.00[AMR][1000 genomes]
rs11992261	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994469	1.00[AMR][1000 genomes]
rs16938757	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938768	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756	1.00[AMR][1000 genomes]
rs3891522	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55988643	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56109904	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56179259	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56290318	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58596858	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60378087	0.90[AMR][1000 genomes]
rs73678171	0.90[AMR][1000 genomes]
rs73678197	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680708	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680713	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761425	chr8:49658066-49669601	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49656800-49662400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49660000-49661600	Enhancers	NHLF	lung
3	chr8:49660200-49661600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:49660200-49661800	Enhancers	NHDF-Ad	bronchial
5	chr8:49660400-49662400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:49660800-49661600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:49660800-49661600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:49660800-49661600	Enhancers	Osteobl	bone
9	chr8:49661000-49668200	Weak transcription	Pancreas	Pancrea
10	chr8:49661200-49661800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:49661200-49662400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:49661400-49666000	Weak transcription	Muscle Satellite Cultured Cells	--

Quick Search: