Variant report

Variant	rs73680713
Chromosome Location	chr8:49699412-49699413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49698250..49700895-chr8:49829079..49831247,2	MCF-7	breast:
2	chr8:49692576..49695901-chr8:49698756..49701661,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11984867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11990439	0.91[AMR][1000 genomes]
rs11991055	0.82[AMR][1000 genomes]
rs11991779	0.91[AMR][1000 genomes]
rs11992261	0.91[AMR][1000 genomes]
rs11994469	0.91[AMR][1000 genomes]
rs16938757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756	0.91[AMR][1000 genomes]
rs3891522	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55988643	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56109904	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56179259	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56290318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58596858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59320109	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60378087	0.82[AMR][1000 genomes]
rs73678171	0.82[AMR][1000 genomes]
rs73678197	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:49686600-49700400	Weak transcription	Esophagus	oesophagus
3	chr8:49690600-49701200	Weak transcription	Ovary	ovary
4	chr8:49691000-49700400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49691200-49705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:49691400-49699800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:49693800-49701200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:49694400-49700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:49694800-49700400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:49694800-49700400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr8:49696000-49699800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:49696000-49699800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:49696000-49700000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:49696200-49700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:49696200-49700800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:49696400-49701000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:49696400-49701200	Weak transcription	Fetal Kidney	kidney
18	chr8:49697400-49699800	Weak transcription	Spleen	Spleen
19	chr8:49698200-49703000	Enhancers	HMEC	breast
20	chr8:49698800-49700000	Enhancers	Adipose Nuclei	Adipose
21	chr8:49698800-49701200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr8:49698800-49704000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:49699000-49699600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:49699000-49700200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:49699000-49701200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr8:49699000-49701200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:49699000-49701600	Enhancers	NHEK	skin
28	chr8:49699000-49702000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr8:49699000-49702000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr8:49699000-49702200	Enhancers	HUVEC	blood vessel
31	chr8:49699000-49703000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:49699000-49705600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr8:49699200-49699600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr8:49699200-49700000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:49699200-49700000	Enhancers	Fetal Brain Male	brain
36	chr8:49699200-49700000	Enhancers	Fetal Lung	lung
37	chr8:49699200-49700200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:49699200-49700400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr8:49699200-49700600	Enhancers	Osteobl	bone
40	chr8:49699200-49701200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:49699200-49701200	Enhancers	NHDF-Ad	bronchial
42	chr8:49699200-49701800	Enhancers	Left Ventricle	heart
43	chr8:49699200-49702200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr8:49699200-49703000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:49699400-49700400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:49699400-49700400	Weak transcription	NHLF	lung
47	chr8:49699400-49700800	Weak transcription	A549	lung
48	chr8:49699400-49701200	Weak transcription	HSMM	muscle
49	chr8:49699400-49705600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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