Variant report

Variant	rs73678171
Chromosome Location	chr8:49618067-49618068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49616836..49619308-chr8:49627377..49629185,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11984867	0.82[AMR][1000 genomes]
rs11990439	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11991055	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11991779	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992261	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11994469	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938757	0.82[AMR][1000 genomes]
rs16938768	0.82[AMR][1000 genomes]
rs3756	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3891522	0.86[AMR][1000 genomes]
rs55988643	0.82[AMR][1000 genomes]
rs56109904	0.82[AMR][1000 genomes]
rs56179259	0.90[AMR][1000 genomes]
rs56209611	0.94[EUR][1000 genomes]
rs56280416	0.89[EUR][1000 genomes]
rs56290318	0.82[AMR][1000 genomes]
rs58596858	0.82[AMR][1000 genomes]
rs59320109	0.90[AMR][1000 genomes]
rs60378087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73678169	0.82[AFR][1000 genomes]
rs73678197	0.90[AMR][1000 genomes]
rs73680708	0.82[AMR][1000 genomes]
rs73680713	0.82[AMR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49605800-49621200	Enhancers	HMEC	breast
4	chr8:49609200-49621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49612800-49619600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:49612800-49626400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:49615800-49618200	Weak transcription	Right Atrium	heart
8	chr8:49616200-49618800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:49616200-49622400	Enhancers	Esophagus	oesophagus
10	chr8:49616400-49618800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:49616600-49618400	Enhancers	Placenta	Placenta
12	chr8:49616800-49620000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:49617000-49618200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:49617200-49622400	Enhancers	Fetal Heart	heart
15	chr8:49617400-49618800	Weak transcription	Spleen	Spleen
16	chr8:49617600-49618200	Enhancers	Fetal Lung	lung
17	chr8:49617600-49619200	Enhancers	Fetal Thymus	thymus
18	chr8:49617600-49621200	Weak transcription	Brain Germinal Matrix	brain
19	chr8:49617600-49621800	Enhancers	Right Ventricle	heart
20	chr8:49617800-49618200	Enhancers	Fetal Stomach	stomach
21	chr8:49617800-49618400	Enhancers	Fetal Brain Female	brain
22	chr8:49617800-49621000	Enhancers	NHEK	skin
23	chr8:49617800-49621600	Enhancers	Left Ventricle	heart
24	chr8:49618000-49618200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:49618000-49619800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:49618000-49619800	Enhancers	Fetal Muscle Leg	muscle
27	chr8:49618000-49626000	Weak transcription	Fetal Kidney	kidney

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