Variant report
| Variant | rs16939870 |
|---|---|
| Chromosome Location | chr15:87635058-87635059 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:87634767..87638633-chr15:87639992..87643377,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs1015205 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16939795 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs16939830 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16939843 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs16939857 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16939918 | 1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16939925 | 0.80[AMR][1000 genomes] |
| rs41437947 | 0.98[EUR][1000 genomes] |
| rs57056084 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7180229 | 0.89[ASN][1000 genomes] |
| rs74025994 | 0.91[ASN][1000 genomes] |
| rs74028907 | 0.98[EUR][1000 genomes] |
| rs8041491 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039254 | chr15:87070357-87942988 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039005 | chr15:87228489-87813438 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv542465 | chr15:87228489-87813438 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1044157 | chr15:87458558-88101699 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv428646 | chr15:87612249-87759363 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:87635000-87635200 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
