Variant report

Variant	rs74028907
Chromosome Location	chr15:87661906-87661907
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1015205	0.98[EUR][1000 genomes]
rs16939795	0.90[EUR][1000 genomes]
rs16939830	0.98[EUR][1000 genomes]
rs16939843	0.97[EUR][1000 genomes]
rs16939857	0.98[EUR][1000 genomes]
rs16939870	0.98[EUR][1000 genomes]
rs16939918	0.95[EUR][1000 genomes]
rs2133569	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2133570	0.91[ASN][1000 genomes]
rs2133571	0.89[ASN][1000 genomes]
rs2347972	0.80[ASN][1000 genomes]
rs2881792	0.80[ASN][1000 genomes]
rs41437947	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56124652	0.80[ASN][1000 genomes]
rs57056084	0.90[EUR][1000 genomes]
rs72760192	0.86[ASN][1000 genomes]
rs74025989	0.81[ASN][1000 genomes]
rs74025990	0.81[ASN][1000 genomes]
rs74025995	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039254	chr15:87070357-87942988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1039005	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv542465	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1044157	chr15:87458558-88101699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428646	chr15:87612249-87759363	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1041382	chr15:87652845-87677194	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87660800-87662000	Enhancers	Brain Substantia Nigra	brain
2	chr15:87661000-87662200	Enhancers	Fetal Brain Male	brain
3	chr15:87661400-87662400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr15:87661600-87662000	Enhancers	Fetal Stomach	stomach
5	chr15:87661600-87662200	Enhancers	Brain Angular Gyrus	brain
6	chr15:87661800-87662400	Enhancers	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links