Variant report
| Variant | rs16945359 |
|---|---|
| Chromosome Location | chr17:59627613-59627614 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:13)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:13 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:150951711..150952336-chr17:59627467..59628156,2 | MCF-7 | breast: | |
| 2 | chr14:77924191..77926706-chr17:59626106..59627959,2 | MCF-7 | breast: | |
| 3 | chr17:59624410..59625951-chr17:59626467..59628486,2 | MCF-7 | breast: | |
| 4 | chr17:59626945..59629871-chr20:49406710..49408624,2 | MCF-7 | breast: | |
| 5 | chr17:59505154..59505828-chr17:59627006..59627633,2 | MCF-7 | breast: | |
| 6 | chr17:59489403..59490099-chr17:59627560..59628195,2 | MCF-7 | breast: | |
| 7 | chr17:59492727..59496859-chr17:59625979..59629778,204 | MCF-7 | breast: | |
| 8 | chr17:59488910..59490632-chr17:59627313..59629760,70 | MCF-7 | breast: | |
| 9 | chr17:59502065..59505674-chr17:59627141..59629263,71 | MCF-7 | breast: | |
| 10 | chr17:59622723..59624408-chr17:59625716..59628592,2 | MCF-7 | breast: | |
| 11 | chr17:59470756..59471632-chr17:59627334..59628259,2 | MCF-7 | breast: | |
| 12 | chr17:59627423..59629533-chr17:59833578..59836014,2 | MCF-7 | breast: | |
| 13 | chr17:59493417..59496032-chr17:59625729..59629317,97 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000267280 | Chromatin interaction |
| ENSG00000187013 | Chromatin interaction |
| ENSG00000100591 | Chromatin interaction |
| ENSG00000151445 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10515201 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12601262 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16945422 | 1.00[CEU][hapmap];0.96[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16945434 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2159399 | 0.82[ASN][1000 genomes] |
| rs56332754 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs59106264 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs60673175 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs61496509 | 0.82[ASN][1000 genomes] |
| rs7219135 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7406786 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8072299 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv457864 | chr17:59612041-59646764 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv575840 | chr17:59612041-59646764 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
