Variant report

Variant	rs61496509
Chromosome Location	chr17:59634100-59634101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12601262	0.85[ASN][1000 genomes]
rs16945359	0.82[ASN][1000 genomes]
rs16945422	0.81[ASN][1000 genomes]
rs16945434	0.81[ASN][1000 genomes]
rs60673175	0.84[ASN][1000 genomes]
rs7219135	0.81[ASN][1000 genomes]
rs7406786	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457864	chr17:59612041-59646764	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
2	nsv575840	chr17:59612041-59646764	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59630400-59634600	Enhancers	Dnd41	blood
2	chr17:59633400-59634400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr17:59633600-59634200	Flanking Active TSS	NHLF	lung
4	chr17:59633600-59634400	Flanking Active TSS	A549	lung
5	chr17:59633800-59634200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr17:59633800-59634200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr17:59633800-59634200	Flanking Active TSS	Fetal Lung	lung
8	chr17:59633800-59634200	Bivalent Enhancer	HepG2	liver
9	chr17:59633800-59634200	Flanking Bivalent TSS/Enh	Osteobl	bone
10	chr17:59634000-59646200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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