Variant report
Variant | rs7219135 |
---|---|
Chromosome Location | chr17:59625659-59625660 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr17:59624083..59626615-chr6:30582391..30583913,2 | MCF-7 | breast: | |
2 | chr17:59624896..59626550-chr3:161088875..161091579,2 | MCF-7 | breast: | |
3 | chr17:59624410..59625951-chr17:59626467..59628486,2 | MCF-7 | breast: | |
4 | chr17:59624460..59626309-chr21:31620289..31621789,2 | MCF-7 | breast: | |
5 | chr17:59619760..59622193-chr17:59624265..59626448,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000196542 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10515201 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs12601262 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12944740 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs16945359 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs16945422 | 1.00[CEU][hapmap];0.96[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs16945434 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2159399 | 0.83[ASN][1000 genomes] |
rs4968571 | 0.82[AFR][1000 genomes] |
rs4968573 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs56332754 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs59106264 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs60673175 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs61496509 | 0.81[ASN][1000 genomes] |
rs6504051 | 1.00[AFR][1000 genomes] |
rs7208191 | 0.91[AFR][1000 genomes] |
rs7406786 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8072299 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv457864 | chr17:59612041-59646764 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
2 | nsv575840 | chr17:59612041-59646764 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
No data |