Variant report
Variant | rs7406786 |
---|---|
Chromosome Location | chr17:59626312-59626313 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:7 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:77924191..77926706-chr17:59626106..59627959,2 | MCF-7 | breast: | |
2 | chr17:59624083..59626615-chr6:30582391..30583913,2 | MCF-7 | breast: | |
3 | chr17:59624896..59626550-chr3:161088875..161091579,2 | MCF-7 | breast: | |
4 | chr17:59492727..59496859-chr17:59625979..59629778,204 | MCF-7 | breast: | |
5 | chr17:59622723..59624408-chr17:59625716..59628592,2 | MCF-7 | breast: | |
6 | chr17:59619760..59622193-chr17:59624265..59626448,2 | MCF-7 | breast: | |
7 | chr17:59493417..59496032-chr17:59625729..59629317,97 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000151445 | Chromatin interaction |
ENSG00000196542 | Chromatin interaction |
ENSG00000100591 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10515201 | 1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs12601262 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12944740 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs16945359 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs16945422 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs16945434 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2159399 | 0.83[ASN][1000 genomes] |
rs4968571 | 0.82[AFR][1000 genomes] |
rs4968573 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs56332754 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs59106264 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs60673175 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs61496509 | 0.81[ASN][1000 genomes] |
rs6504051 | 1.00[AFR][1000 genomes] |
rs7208191 | 0.91[AFR][1000 genomes] |
rs7219135 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8072299 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv457864 | chr17:59612041-59646764 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
2 | nsv575840 | chr17:59612041-59646764 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
No data |