Variant report

Variant	rs16945503
Chromosome Location	chr17:59723258-59723259
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59720411..59725349-chr17:59937191..59942548,5	MCF-7	breast:
2	chr17:59493495..59495755-chr17:59720945..59723473,2	MCF-7	breast:
3	chr1:107668947..107670971-chr17:59721901..59724161,2	MCF-7	breast:
4	chr17:59703865..59706835-chr17:59722983..59724924,2	MCF-7	breast:
5	chr17:59721722..59724178-chr17:59726646..59728632,2	K562	blood:
6	chr17:59721922..59723518-chr21:41757556..41760090,2	MCF-7	breast:
7	chr17:59722216..59723916-chr17:60003797..60005415,2	MCF-7	breast:
8	chr17:59487501..59490259-chr17:59721546..59724422,2	MCF-7	breast:
9	chr17:59712266..59715668-chr17:59718639..59723626,4	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000187013	Chromatin interaction
ENSG00000108506	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000267280	Chromatin interaction

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59722400-59724400	Enhancers	NHLF	lung
2	chr17:59722600-59724400	Enhancers	NHDF-Ad	bronchial
3	chr17:59722600-59724600	Enhancers	Osteobl	bone
4	chr17:59722600-59725000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr17:59722800-59723800	Weak transcription	Brain Germinal Matrix	brain
6	chr17:59723200-59724400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr17:59723200-59724400	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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