Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59746827..59750563-chr17:59755345..59757760,6	MCF-7	breast:
2	chr17:59756283..59758393-chr17:59839694..59841860,2	MCF-7	breast:
3	chr17:59756079..59756760-chr17:59800573..59801322,2	MCF-7	breast:
4	chr17:59754587..59756738-chr17:59917430..59920080,2	MCF-7	breast:
5	chr17:58602078..58603771-chr17:59756212..59758293,2	MCF-7	breast:
6	chr17:59754561..59757250-chr17:59924100..59926334,2	MCF-7	breast:
7	chr17:59754248..59756951-chr20:52209033..52210660,2	MCF-7	breast:
8	chr17:59739596..59741326-chr17:59756120..59757677,2	MCF-7	breast:
9	chr17:59734711..59736213-chr17:59754506..59757344,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11079449	0.91[YRI][hapmap]
rs11079450	0.83[AFR][1000 genomes]
rs16945495	1.00[ASW][hapmap];0.91[YRI][hapmap]
rs16945503	1.00[AMR][1000 genomes]
rs16945506	1.00[AMR][1000 genomes]
rs16945522	0.81[YRI][hapmap];0.85[AFR][1000 genomes]
rs2378882	0.98[AFR][1000 genomes]
rs28409395	0.98[AFR][1000 genomes]
rs59115933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212939	0.92[AFR][1000 genomes]
rs7212941	0.87[AFR][1000 genomes]
rs7222218	0.85[LWK][hapmap]
rs7225251	0.92[YRI][hapmap]
rs8067024	0.96[AFR][1000 genomes]
rs9890079	1.00[AMR][1000 genomes]
rs9892156	0.96[AFR][1000 genomes]
rs9892747	0.96[AFR][1000 genomes]
rs9894788	1.00[AMR][1000 genomes]
rs9896244	0.96[AFR][1000 genomes]
rs9897971	0.98[AFR][1000 genomes]
rs9898853	0.80[AFR][1000 genomes]
rs9901708	1.00[AMR][1000 genomes]
rs9902352	0.85[AFR][1000 genomes]
rs9904939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9905071	0.89[LWK][hapmap];0.85[MKK][hapmap]
rs9909664	0.86[ASW][hapmap];0.89[LWK][hapmap];0.85[MKK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs9911108	1.00[AMR][1000 genomes]
rs9912137	0.98[AFR][1000 genomes]
rs9916169	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59751000-59777200	Weak transcription	HepG2	liver
2	chr17:59755600-59778000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:59756400-59760800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:59756600-59758400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:59756600-59772600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:59756600-59777000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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