Variant report

Variant	rs9902352
Chromosome Location	chr17:59744753-59744754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:89786646..89788371-chr17:59744466..59746072,2	MCF-7	breast:
2	chr17:59744163..59748198-chr17:59775026..59778499,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075399	Chromatin interaction
ENSG00000158805	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11079449	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11079450	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	1.00[AMR][1000 genomes]
rs16945466	1.00[AMR][1000 genomes]
rs16945472	1.00[AMR][1000 genomes]
rs16945489	1.00[AMR][1000 genomes]
rs16945495	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2378882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409395	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28637035	1.00[AMR][1000 genomes]
rs28839618	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59115933	0.85[AFR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	1.00[AMR][1000 genomes]
rs7207425	1.00[AMR][1000 genomes]
rs7212939	0.85[AFR][1000 genomes]
rs7212941	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213607	1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8077553	0.85[AFR][1000 genomes]
rs9303447	1.00[AMR][1000 genomes]
rs9892156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892747	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893569	1.00[AMR][1000 genomes]
rs9894800	1.00[AMR][1000 genomes]
rs9896244	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902447	1.00[AMR][1000 genomes]
rs9903376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9904939	0.85[AFR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	1.00[AMR][1000 genomes]
rs9910461	1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9911403	1.00[AMR][1000 genomes]
rs9912137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912417	1.00[AMR][1000 genomes]
rs9916169	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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