Variant report

Variant	rs16945466
Chromosome Location	chr17:59660854-59660855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:45)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:45 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59660485..59660988-chr17:59713345..59713887,2	MCF-7	breast:
2	chr17:59489824..59490393-chr17:59660151..59661033,3	K562	blood:
3	chr17:59628030..59629172-chr17:59660308..59661110,6	MCF-7	breast:
4	chr17:59486342..59487355-chr17:59660019..59660906,3	MCF-7	breast:
5	chr17:59491624..59492156-chr17:59660433..59661053,2	MCF-7	breast:
6	chr17:59660674..59661297-chr20:55688833..55689808,2	MCF-7	breast:
7	chr17:59650908..59651619-chr17:59660759..59661508,2	MCF-7	breast:
8	chr17:59660282..59661291-chr17:59914103..59915253,14	MCF-7	breast:
9	chr17:59660129..59660868-chr6:26597030..26597566,2	MCF-7	breast:
10	chr17:59493702..59495482-chr17:59660155..59662138,46	MCF-7	breast:
11	chr17:59489337..59490962-chr17:59659719..59662395,81	MCF-7	breast:
12	chr17:59477732..59478309-chr17:59660703..59661411,2	MCF-7	breast:
13	chr17:59487997..59488793-chr17:59660096..59660940,3	MCF-7	breast:
14	chr14:65913215..65915325-chr17:59660690..59662485,2	MCF-7	breast:
15	chr17:59489511..59490021-chr17:59660454..59661205,2	MCF-7	breast:
16	chr17:59660345..59661313-chr17:59712990..59714287,7	MCF-7	breast:
17	chr17:59502676..59503956-chr17:59660281..59661931,6	MCF-7	breast:
18	chr17:59493936..59494881-chr17:59660574..59661086,2	K562	blood:
19	chr17:59660338..59661072-chr20:49410861..49411914,5	MCF-7	breast:
20	chr17:59659957..59662181-chr20:49407020..49408932,2	MCF-7	breast:
21	chr17:59659876..59662348-chr20:52824279..52826629,2	MCF-7	breast:
22	chr17:59488939..59491583-chr17:59658963..59661254,37	MCF-7	breast:
23	chr17:59660277..59660880-chr17:59913200..59913890,2	MCF-7	breast:
24	chr17:59651929..59653360-chr17:59660172..59661475,13	MCF-7	breast:
25	chr17:59660380..59661037-chr17:59913024..59913836,2	MCF-7	breast:
26	chr17:59660091..59666869-chr20:55837280..55844266,8	MCF-7	breast:
27	chr17:59652128..59652854-chr17:59660632..59661252,2	MCF-7	breast:
28	chr17:59489467..59490398-chr17:59660362..59661124,5	MCF-7	breast:
29	chr17:59660075..59661715-chr7:6512258..6513953,2	MCF-7	breast:
30	chr17:59628447..59629285-chr17:59660315..59661120,2	MCF-7	breast:
31	chr17:59660291..59661248-chr17:59914546..59915238,3	MCF-7	breast:
32	chr17:59495936..59496546-chr17:59660486..59661234,2	MCF-7	breast:
33	chr12:57632643..57633417-chr17:59660761..59661652,2	MCF-7	breast:
34	chr17:59660286..59662351-chr20:52311555..52314413,2	MCF-7	breast:
35	chr17:59659308..59662262-chr17:59940616..59943110,2	MCF-7	breast:
36	chr17:59079487..59080409-chr17:59660316..59660945,2	MCF-7	breast:
37	chr17:59660293..59661097-chr20:49411290..49412115,2	MCF-7	breast:
38	chr17:59655679..59662005-chr17:59908866..59914904,7	MCF-7	breast:
39	chr17:59660412..59661214-chr3:64008784..64009308,2	MCF-7	breast:
40	chr17:59658254..59661126-chr20:49407786..49409568,2	MCF-7	breast:
41	chr17:59493870..59495355-chr17:59659930..59661309,18	MCF-7	breast:
42	chr17:59660095..59662602-chr17:59664049..59665588,2	K562	blood:
43	chr17:59660648..59661362-chr17:59673219..59674121,2	MCF-7	breast:
44	chr17:59503141..59505050-chr17:59660125..59661713,14	MCF-7	breast:
45	chr17:59660034..59661328-chr20:49406913..49407821,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124243	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000163636	Chromatin interaction
ENSG00000101132	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000141376	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945472	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945489	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs16945495	1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839618	1.00[AMR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7207425	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9894800	1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910461	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9910891	1.00[YRI][hapmap]
rs9911403	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59658800-59661400	Enhancers	HepG2	liver
2	chr17:59659000-59662200	Weak transcription	Fetal Lung	lung
3	chr17:59660000-59661000	Enhancers	A549	lung

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