Variant report

Variant	rs7223319
Chromosome Location	chr17:59656165-59656166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59655300..59657821-chr20:45898560..45900730,2	MCF-7	breast:
2	chr17:59655915..59656441-chr2:12998211..12998829,2	MCF-7	breast:
3	chr17:59655575..59659103-chr17:59939621..59942092,4	MCF-7	breast:
4	chr17:59655980..59658048-chr17:59890809..59893274,2	MCF-7	breast:
5	chr17:59655755..59656515-chr2:14353604..14354292,2	MCF-7	breast:
6	chr12:2902522..2905212-chr17:59654225..59656798,2	MCF-7	breast:
7	chr17:58630111..58633007-chr17:59654740..59656942,2	MCF-7	breast:
8	chr17:59654537..59656691-chr17:80053750..80056053,2	MCF-7	breast:
9	chr17:59655679..59662005-chr17:59908866..59914904,7	MCF-7	breast:
10	chr17:59655872..59658451-chr2:170549861..170552568,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000154479	Chromatin interaction
ENSG00000213160	Chromatin interaction
ENSG00000256030	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000144362	Chromatin interaction
ENSG00000004478	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945451	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945455	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945466	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945472	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945489	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs16945495	1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839618	1.00[AMR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7207425	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	1.00[ASW][hapmap];0.94[LWK][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9894800	1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910461	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9910891	0.87[ASW][hapmap];0.93[YRI][hapmap]
rs9911403	0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59653000-59657400	Weak transcription	A549	lung
2	chr17:59653200-59656600	Weak transcription	HepG2	liver
3	chr17:59653600-59657800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr17:59655000-59656800	Enhancers	Fetal Lung	lung
5	chr17:59655800-59656400	Weak transcription	NHLF	lung
6	chr17:59655800-59656800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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