Variant report
Variant | rs11079449 |
---|---|
Chromosome Location | chr17:59737576-59737577 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr17:59737480..59739924-chr17:59791179..59793647,2 | MCF-7 | breast: | |
2 | chr11:77850171..77852366-chr17:59737478..59739727,2 | MCF-7 | breast: | |
3 | chr17:59736385..59739988-chr17:59806078..59809150,3 | MCF-7 | breast: | |
4 | chr17:59487006..59489833-chr17:59735650..59739438,3 | MCF-7 | breast: | |
5 | chr17:59737089..59739908-chr8:116584424..116586257,2 | MCF-7 | breast: | |
6 | chr17:59686544..59688698-chr17:59736460..59738359,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000246174 | Chromatin interaction |
ENSG00000267280 | Chromatin interaction |
ENSG00000187013 | Chromatin interaction |
ENSG00000159063 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11079450 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16945451 | 1.00[AMR][1000 genomes] |
rs16945455 | 1.00[AMR][1000 genomes] |
rs16945466 | 1.00[AMR][1000 genomes] |
rs16945472 | 1.00[AMR][1000 genomes] |
rs16945489 | 1.00[AMR][1000 genomes] |
rs16945495 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs16945522 | 0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2378882 | 1.00[AMR][1000 genomes] |
rs28409395 | 1.00[AMR][1000 genomes] |
rs28637035 | 1.00[AMR][1000 genomes] |
rs28839618 | 1.00[AMR][1000 genomes] |
rs60066089 | 1.00[AMR][1000 genomes] |
rs61739271 | 1.00[AMR][1000 genomes] |
rs7207425 | 1.00[AMR][1000 genomes] |
rs7212941 | 1.00[AMR][1000 genomes] |
rs7213607 | 1.00[AMR][1000 genomes] |
rs7213652 | 1.00[AMR][1000 genomes] |
rs7219055 | 1.00[AMR][1000 genomes] |
rs7223319 | 1.00[AMR][1000 genomes] |
rs7225251 | 1.00[AMR][1000 genomes] |
rs8067024 | 1.00[AMR][1000 genomes] |
rs8077553 | 0.91[YRI][hapmap] |
rs9303447 | 1.00[AMR][1000 genomes] |
rs9892156 | 1.00[AMR][1000 genomes] |
rs9892747 | 1.00[AMR][1000 genomes] |
rs9893569 | 1.00[AMR][1000 genomes] |
rs9894800 | 1.00[AMR][1000 genomes] |
rs9896244 | 1.00[AMR][1000 genomes] |
rs9897645 | 1.00[AMR][1000 genomes] |
rs9897967 | 1.00[AMR][1000 genomes] |
rs9897971 | 1.00[AMR][1000 genomes] |
rs9898853 | 1.00[AMR][1000 genomes] |
rs9899420 | 1.00[AMR][1000 genomes] |
rs9901535 | 1.00[AMR][1000 genomes] |
rs9901665 | 1.00[AMR][1000 genomes] |
rs9902352 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9902447 | 1.00[AMR][1000 genomes] |
rs9903376 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9909664 | 0.84[YRI][hapmap];1.00[AMR][1000 genomes] |
rs9910311 | 1.00[AMR][1000 genomes] |
rs9910461 | 1.00[AMR][1000 genomes] |
rs9910726 | 1.00[AMR][1000 genomes] |
rs9911403 | 1.00[AMR][1000 genomes] |
rs9912137 | 1.00[AMR][1000 genomes] |
rs9912417 | 1.00[AMR][1000 genomes] |
rs9916169 | 0.84[YRI][hapmap];1.00[AMR][1000 genomes] |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:59728400-59740000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr17:59734400-59738000 | Enhancers | HUVEC | blood vessel |
3 | chr17:59735000-59739800 | Weak transcription | Osteobl | bone |
4 | chr17:59737400-59738200 | Enhancers | Fetal Lung | lung |