Variant report

Variant	rs16945522
Chromosome Location	chr17:59738419-59738420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59737480..59739924-chr17:59791179..59793647,2	MCF-7	breast:
2	chr11:77850171..77852366-chr17:59737478..59739727,2	MCF-7	breast:
3	chr17:59736385..59739988-chr17:59806078..59809150,3	MCF-7	breast:
4	chr17:59738058..59738912-chr17:59747524..59748029,2	MCF-7	breast:
5	chr17:59487006..59489833-chr17:59735650..59739438,3	MCF-7	breast:
6	chr17:59737089..59739908-chr8:116584424..116586257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267280	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000246174	Chromatin interaction
ENSG00000159063	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11079449	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11079450	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	1.00[AMR][1000 genomes]
rs16945466	1.00[AMR][1000 genomes]
rs16945472	1.00[AMR][1000 genomes]
rs16945489	1.00[AMR][1000 genomes]
rs16945495	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2378882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28409395	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28637035	1.00[AMR][1000 genomes]
rs28839618	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59115933	0.85[AFR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	1.00[AMR][1000 genomes]
rs7207425	1.00[AMR][1000 genomes]
rs7212939	0.85[AFR][1000 genomes]
rs7212941	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213607	1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8077553	0.81[YRI][hapmap];0.85[AFR][1000 genomes]
rs9303447	1.00[AMR][1000 genomes]
rs9892156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892747	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9893569	1.00[AMR][1000 genomes]
rs9894800	1.00[AMR][1000 genomes]
rs9896244	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9902447	1.00[AMR][1000 genomes]
rs9903376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9904939	0.85[AFR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	1.00[AMR][1000 genomes]
rs9910461	1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9911403	1.00[AMR][1000 genomes]
rs9912137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912417	1.00[AMR][1000 genomes]
rs9916169	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59728400-59740000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr17:59735000-59739800	Weak transcription	Osteobl	bone

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