Variant report

Variant	rs16945495
Chromosome Location	chr17:59719809-59719810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59718287..59720917-chr17:59914782..59916629,2	MCF-7	breast:
2	chr17:59717658..59720531-chr17:59908133..59910191,3	MCF-7	breast:
3	chr17:59700010..59701801-chr17:59719540..59721809,2	MCF-7	breast:
4	chr17:59698074..59699981-chr17:59717709..59720819,3	MCF-7	breast:
5	chr17:59713739..59720977-chr17:59936276..59942105,9	MCF-7	breast:
6	chr17:59708015..59710272-chr17:59719199..59721078,2	MCF-7	breast:
7	chr17:59694214..59697045-chr17:59717627..59720689,3	MCF-7	breast:
8	chr17:59692941..59695723-chr17:59718310..59720585,2	K562	blood:
9	chr17:59718611..59721023-chr17:59912495..59915335,3	MCF-7	breast:
10	chr1:145381878..145384423-chr17:59718987..59721511,2	MCF-7	breast:
11	chr17:59486754..59490043-chr17:59717429..59722148,4	MCF-7	breast:
12	chr17:59712266..59715668-chr17:59718639..59723626,4	MCF-7	breast:
13	chr17:7252410..7254396-chr17:59718335..59721226,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000267280	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000072818	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11079449	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11079450	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	1.00[AMR][1000 genomes]
rs16945466	1.00[AMR][1000 genomes]
rs16945472	1.00[AMR][1000 genomes]
rs16945489	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945522	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	1.00[AMR][1000 genomes]
rs28839618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60066089	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739271	1.00[AMR][1000 genomes]
rs7207425	1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	1.00[AMR][1000 genomes]
rs7225251	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs8077553	1.00[ASW][hapmap];0.91[YRI][hapmap]
rs9303447	1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	1.00[AMR][1000 genomes]
rs9894800	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897967	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901535	1.00[AMR][1000 genomes]
rs9901665	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9902352	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9902447	1.00[AMR][1000 genomes]
rs9903376	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9909664	0.86[ASW][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs9910311	1.00[AMR][1000 genomes]
rs9910461	1.00[AMR][1000 genomes]
rs9910726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911403	1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	1.00[AMR][1000 genomes]
rs9916169	0.91[YRI][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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