Variant report

Variant	rs9912417
Chromosome Location	chr17:59664183-59664184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59660095..59662602-chr17:59664049..59665588,2	K562	blood:
2	chr12:12939909..12942815-chr17:59663380..59666226,2	MCF-7	breast:
3	chr17:59660091..59666869-chr20:55837280..55844266,8	MCF-7	breast:
4	chr17:59663615..59666482-chr20:46065852..46068029,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction
ENSG00000226308	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945466	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945489	1.00[AMR][1000 genomes]
rs16945495	1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839618	1.00[AMR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7207425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7223319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9894800	1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910461	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9911403	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59661400-59665600	Weak transcription	HepG2	liver

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