Variant report

Variant	rs7213607
Chromosome Location	chr17:59654914-59654915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59654027..59655880-chr20:55840518..55842584,2	MCF-7	breast:
2	chr17:59649847..59655729-chr20:49404839..49413187,14	MCF-7	breast:
3	chr17:59653191..59655692-chr17:59770762..59772888,2	MCF-7	breast:
4	chr12:2902522..2905212-chr17:59654225..59656798,2	MCF-7	breast:
5	chr17:58630111..58633007-chr17:59654740..59656942,2	MCF-7	breast:
6	chr17:59654537..59656691-chr17:80053750..80056053,2	MCF-7	breast:
7	chr17:59650866..59655312-chr20:49406184..49408957,5	MCF-7	breast:
8	chr1:149222363..149225335-chr17:59653964..59655961,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000004478	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000256030	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945489	1.00[AMR][1000 genomes]
rs16945495	1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839618	1.00[AMR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7207425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9894800	1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910461	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9911403	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59653000-59655000	Weak transcription	NHLF	lung
2	chr17:59653000-59655400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:59653000-59657400	Weak transcription	A549	lung
4	chr17:59653200-59656600	Weak transcription	HepG2	liver
5	chr17:59653600-59657800	Weak transcription	Muscle Satellite Cultured Cells	--

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