Variant report

Variant	rs9894800
Chromosome Location	chr17:59692124-59692125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59688409..59694117-chr20:55840228..55843063,4	MCF-7	breast:
2	chr17:59690417..59693153-chr20:46178487..46181271,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226308	Chromatin interaction
ENSG00000101144	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	1.00[AMR][1000 genomes]
rs16945466	1.00[AMR][1000 genomes]
rs16945472	1.00[AMR][1000 genomes]
rs16945489	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945495	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	1.00[AMR][1000 genomes]
rs28839618	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60066089	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739271	1.00[AMR][1000 genomes]
rs7207425	1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897967	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901535	1.00[AMR][1000 genomes]
rs9901665	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	1.00[AMR][1000 genomes]
rs9910461	1.00[AMR][1000 genomes]
rs9910726	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911403	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59688600-59693400	Weak transcription	Fetal Lung	lung
2	chr17:59692000-59692200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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