Variant report

Variant	rs16945455
Chromosome Location	chr17:59658544-59658545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59655575..59659103-chr17:59939621..59942092,4	MCF-7	breast:
2	chr1:201366987..201368888-chr17:59658331..59660102,2	MCF-7	breast:
3	chr17:59658203..59660846-chr20:49410635..49412897,2	MCF-7	breast:
4	chr17:59655679..59662005-chr17:59908866..59914904,7	MCF-7	breast:
5	chr17:59658254..59661126-chr20:49407786..49409568,2	MCF-7	breast:
6	chr17:59494357..59495148-chr17:59658506..59659905,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000159166	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945466	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945472	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945489	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs16945495	1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839618	1.00[AMR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7207425	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9894800	1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910461	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9910891	1.00[YRI][hapmap]
rs9911403	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59657400-59658800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr17:59657400-59659600	Enhancers	A549	lung
3	chr17:59657600-59658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:59657600-59658800	Bivalent Enhancer	NHDF-Ad	bronchial
5	chr17:59657600-59659000	Enhancers	Fetal Lung	lung
6	chr17:59657600-59660000	Enhancers	NHLF	lung
7	chr17:59657800-59659000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:59658200-59658600	Enhancers	HepG2	liver
9	chr17:59658400-59659000	Bivalent Enhancer	Osteobl	bone

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