Variant report

Variant	rs9911403
Chromosome Location	chr17:59687437-59687438
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114888820..114889807-chr17:59686777..59687640,2	MCF-7	breast:
2	chr11:99621291..99622792-chr17:59685918..59688268,2	MCF-7	breast:
3	chr17:59686544..59688698-chr17:59736460..59738359,2	MCF-7	breast:
4	chr17:56707849..56710299-chr17:59686252..59688035,2	MCF-7	breast:
5	chr17:59686543..59688789-chr17:59909951..59912195,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945466	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945472	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945489	1.00[AMR][1000 genomes]
rs16945495	1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839618	1.00[AMR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7207425	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9894800	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910461	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9910891	1.00[YRI][hapmap]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links