Variant report

Variant	rs16945451
Chromosome Location	chr17:59653167-59653168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59649847..59655729-chr20:49404839..49413187,14	MCF-7	breast:
2	chr17:59653156..59653811-chr20:52573593..52574534,2	MCF-7	breast:
3	chr17:59652556..59653376-chr17:59764319..59764870,2	MCF-7	breast:
4	chr17:59489184..59491261-chr17:59650345..59653673,119	MCF-7	breast:
5	chr17:59489238..59492668-chr17:59650942..59653805,58	MCF-7	breast:
6	chr17:59502510..59504407-chr17:59651814..59654182,19	MCF-7	breast:
7	chr17:59651419..59653338-chr2:140196410..140197431,15	MCF-7	breast:
8	chr17:59493093..59495453-chr17:59650549..59653616,140	MCF-7	breast:
9	chr17:57914027..57915793-chr17:59652699..59654229,2	MCF-7	breast:
10	chr1:85830768..85831788-chr17:59651865..59653642,10	MCF-7	breast:
11	chr17:59652578..59654171-chr17:59913004..59915141,2	MCF-7	breast:
12	chr17:59650869..59653370-chr17:59912861..59915398,2	MCF-7	breast:
13	chr17:59502750..59505120-chr17:59650612..59653501,43	MCF-7	breast:
14	chr17:59652862..59653413-chr17:59914318..59914862,2	MCF-7	breast:
15	chr17:59651146..59653254-chr20:49409471..49411508,2	MCF-7	breast:
16	chr17:59650866..59655312-chr20:49406184..49408957,5	MCF-7	breast:
17	chr17:59651929..59653360-chr17:59660172..59661475,13	MCF-7	breast:
18	chr17:59653085..59653968-chr17:59661324..59661941,2	MCF-7	breast:
19	chr17:59493437..59495595-chr17:59651010..59653757,53	MCF-7	breast:
20	chr17:59651369..59653602-chr17:59905889..59907534,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124243	Chromatin interaction
ENSG00000062716	Chromatin interaction

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945455	1.00[AMR][1000 genomes]
rs16945466	1.00[AMR][1000 genomes]
rs16945472	1.00[AMR][1000 genomes]
rs16945489	1.00[AMR][1000 genomes]
rs16945495	1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	1.00[AMR][1000 genomes]
rs28839618	1.00[AMR][1000 genomes]
rs60066089	1.00[AMR][1000 genomes]
rs61739271	1.00[AMR][1000 genomes]
rs7207425	1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	1.00[AMR][1000 genomes]
rs7213652	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7219055	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7223319	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	1.00[AMR][1000 genomes]
rs9894800	1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	1.00[AMR][1000 genomes]
rs9897967	1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	1.00[AMR][1000 genomes]
rs9901535	1.00[AMR][1000 genomes]
rs9901665	1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	1.00[AMR][1000 genomes]
rs9910461	1.00[AMR][1000 genomes]
rs9910726	1.00[AMR][1000 genomes]
rs9911403	1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59652200-59653200	Enhancers	HepG2	liver
2	chr17:59652400-59653600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr17:59653000-59655000	Weak transcription	NHLF	lung
4	chr17:59653000-59655400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:59653000-59657400	Weak transcription	A549	lung

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