Variant report

Variant	rs16945489
Chromosome Location	chr17:59695463-59695464
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:53297685..53299225-chr17:59694461..59696347,2	MCF-7	breast:
2	chr17:59693752..59696343-chr17:59703736..59707002,4	MCF-7	breast:
3	chr17:59694214..59697045-chr17:59717627..59720689,3	MCF-7	breast:
4	chr17:59694658..59695552-chr20:45824679..45825551,2	MCF-7	breast:
5	chr17:59692941..59695723-chr17:59718310..59720585,2	K562	blood:
6	chr17:59695153..59698102-chr21:39816104..39818825,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170421	Chromatin interaction
ENSG00000157554	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11079449	1.00[AMR][1000 genomes]
rs11079450	1.00[AMR][1000 genomes]
rs16945451	1.00[AMR][1000 genomes]
rs16945455	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs16945466	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs16945472	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs16945495	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945522	1.00[AMR][1000 genomes]
rs2378882	1.00[AMR][1000 genomes]
rs28409395	1.00[AMR][1000 genomes]
rs28637035	1.00[AMR][1000 genomes]
rs28839618	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60066089	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61739271	1.00[AMR][1000 genomes]
rs7207425	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs7212941	1.00[AMR][1000 genomes]
rs7213607	1.00[AMR][1000 genomes]
rs7213652	1.00[AMR][1000 genomes]
rs7219055	1.00[AMR][1000 genomes]
rs7223319	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs7225251	1.00[AMR][1000 genomes]
rs8067024	1.00[AMR][1000 genomes]
rs9303447	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs9892156	1.00[AMR][1000 genomes]
rs9892747	1.00[AMR][1000 genomes]
rs9893569	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs9894800	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9896244	1.00[AMR][1000 genomes]
rs9897645	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897967	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897971	1.00[AMR][1000 genomes]
rs9898853	1.00[AMR][1000 genomes]
rs9899420	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9901535	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs9901665	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9902352	1.00[AMR][1000 genomes]
rs9902447	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs9903376	1.00[AMR][1000 genomes]
rs9909664	1.00[AMR][1000 genomes]
rs9910311	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs9910461	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs9910726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910891	0.85[YRI][hapmap]
rs9911403	1.00[AMR][1000 genomes]
rs9912137	1.00[AMR][1000 genomes]
rs9912417	1.00[AMR][1000 genomes]
rs9916169	1.00[AMR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59693600-59701200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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