Variant report

Variant	rs59115933
Chromosome Location	chr17:59759283-59759284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59758478..59761254-chr17:59816609..59819220,2	MCF-7	breast:
2	chr17:59745803..59748176-chr17:59757968..59759867,2	MCF-7	breast:
3	chr17:59757651..59759425-chr17:59822569..59825415,2	MCF-7	breast:
4	chr17:59730329..59732919-chr17:59757309..59759964,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11079450	0.83[AFR][1000 genomes]
rs16945503	1.00[AMR][1000 genomes]
rs16945506	1.00[AMR][1000 genomes]
rs16945522	0.85[AFR][1000 genomes]
rs2378882	0.98[AFR][1000 genomes]
rs28409395	0.98[AFR][1000 genomes]
rs7212939	0.92[AFR][1000 genomes]
rs7212941	0.87[AFR][1000 genomes]
rs8067024	0.96[AFR][1000 genomes]
rs8077553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9890079	1.00[AMR][1000 genomes]
rs9892156	0.96[AFR][1000 genomes]
rs9892747	0.96[AFR][1000 genomes]
rs9894788	1.00[AMR][1000 genomes]
rs9896244	0.96[AFR][1000 genomes]
rs9897971	0.98[AFR][1000 genomes]
rs9898853	0.80[AFR][1000 genomes]
rs9901708	1.00[AMR][1000 genomes]
rs9902352	0.85[AFR][1000 genomes]
rs9904939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9909664	0.84[AFR][1000 genomes]
rs9911108	1.00[AMR][1000 genomes]
rs9912137	0.98[AFR][1000 genomes]
rs9916169	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59751000-59777200	Weak transcription	HepG2	liver
2	chr17:59755600-59778000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:59756400-59760800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:59756600-59772600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr17:59756600-59777000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:59757000-59759600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:59757000-59765400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr17:59757000-59772000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:59757200-59760600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr17:59757200-59760800	Weak transcription	Dnd41	blood
11	chr17:59757400-59775600	Weak transcription	A549	lung
12	chr17:59758400-59760000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr17:59758400-59760600	Weak transcription	NH-A	brain
14	chr17:59758400-59772400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:59758600-59760000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr17:59758600-59765400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr17:59758600-59766800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr17:59758600-59768800	Weak transcription	Fetal Intestine Small	intestine
19	chr17:59759000-59760600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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