Variant report
| Variant | rs9904939 |
|---|---|
| Chromosome Location | chr17:59751226-59751227 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11079450 | 0.83[AFR][1000 genomes] |
| rs16945503 | 1.00[AMR][1000 genomes] |
| rs16945506 | 1.00[AMR][1000 genomes] |
| rs16945522 | 0.85[AFR][1000 genomes] |
| rs2378882 | 0.94[AFR][1000 genomes] |
| rs28409395 | 0.94[AFR][1000 genomes] |
| rs59115933 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7212939 | 0.89[AFR][1000 genomes] |
| rs7212941 | 0.84[AFR][1000 genomes] |
| rs8067024 | 0.93[AFR][1000 genomes] |
| rs8077553 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9890079 | 1.00[AMR][1000 genomes] |
| rs9892156 | 0.93[AFR][1000 genomes] |
| rs9892747 | 0.93[AFR][1000 genomes] |
| rs9894788 | 1.00[AMR][1000 genomes] |
| rs9896244 | 0.93[AFR][1000 genomes] |
| rs9897971 | 0.94[AFR][1000 genomes] |
| rs9901708 | 1.00[AMR][1000 genomes] |
| rs9902352 | 0.85[AFR][1000 genomes] |
| rs9909664 | 0.80[AFR][1000 genomes] |
| rs9911108 | 1.00[AMR][1000 genomes] |
| rs9912137 | 0.94[AFR][1000 genomes] |
| rs9916169 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3378293 | chr17:59744117-60124899 | ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 175 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:59751000-59777200 | Weak transcription | HepG2 | liver |
