Variant report

Variant	rs16946365
Chromosome Location	chr15:92637585-92637586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16946382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17597560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17597608	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6496879	1.00[JPT][hapmap]
rs6496896	1.00[JPT][hapmap]
rs7175217	1.00[JPT][hapmap]
rs73540490	0.87[ASN][1000 genomes]
rs8039722	1.00[JPT][hapmap]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92619200-92638000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:92619400-92638400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:92619800-92638000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:92621000-92638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:92621000-92638000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:92621000-92639200	Weak transcription	Lung	lung
7	chr15:92621400-92638000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:92623400-92640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:92625600-92638200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:92627400-92641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:92630800-92641800	Weak transcription	NHEK	skin
13	chr15:92631200-92638200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:92631400-92638200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:92631400-92640600	Weak transcription	Esophagus	oesophagus
16	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:92632600-92641200	Weak transcription	Thymus	Thymus
18	chr15:92634000-92638000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:92634000-92638800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:92634600-92638600	Enhancers	Primary hematopoietic stem cells	blood
21	chr15:92634600-92638600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr15:92634800-92640600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:92634800-92640600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:92634800-92640600	Weak transcription	Fetal Brain Female	brain
25	chr15:92635000-92639400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:92635000-92640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:92635000-92640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:92635000-92640600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:92635000-92640600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:92635000-92640600	Weak transcription	Brain Angular Gyrus	brain
31	chr15:92635000-92640600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:92635200-92638400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:92635200-92640600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:92635400-92638800	Weak transcription	Right Ventricle	heart
35	chr15:92635400-92641000	Weak transcription	HSMMtube	muscle
36	chr15:92635600-92640800	Weak transcription	Brain Anterior Caudate	brain
37	chr15:92635800-92640600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:92635800-92640800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:92636000-92638000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr15:92636000-92638800	Weak transcription	Spleen	Spleen
41	chr15:92636000-92640600	Weak transcription	Left Ventricle	heart
42	chr15:92636000-92648600	Weak transcription	Adipose Nuclei	Adipose
43	chr15:92636200-92638000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:92636200-92638600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:92636200-92640600	Weak transcription	Osteobl	bone
46	chr15:92636200-92640800	Weak transcription	Fetal Heart	heart
47	chr15:92636600-92638200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:92636600-92638200	Weak transcription	Brain Hippocampus Middle	brain
49	chr15:92636600-92640800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:92636800-92640600	Weak transcription	Brain Cingulate Gyrus	brain

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