Variant report

Variant	rs17597560
Chromosome Location	chr15:92654946-92654947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16946365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17597608	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6496879	1.00[JPT][hapmap]
rs6496896	1.00[JPT][hapmap]
rs7175217	1.00[JPT][hapmap]
rs73540490	0.87[ASN][1000 genomes]
rs8039722	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3584923	chr15:92653655-92663201	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:92641000-92657200	Weak transcription	Pancreas	Pancrea
3	chr15:92641000-92663600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:92641400-92660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:92641400-92660400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:92641400-92660400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:92642400-92665000	Weak transcription	Gastric	stomach
9	chr15:92642600-92656600	Weak transcription	Aorta	Aorta
10	chr15:92643000-92658000	Weak transcription	Liver	Liver
11	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:92645200-92656800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:92645400-92655800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:92645400-92659800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:92645400-92663400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:92646000-92656200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:92646200-92658000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:92647600-92658600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr15:92647600-92663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:92647800-92656000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:92647800-92659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:92648000-92655800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:92648200-92692600	Weak transcription	NHLF	lung
28	chr15:92648600-92655800	Enhancers	Fetal Heart	heart
29	chr15:92648600-92660600	Weak transcription	HMEC	breast
30	chr15:92649000-92664000	Weak transcription	Ovary	ovary
31	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
32	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr15:92649400-92655800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:92649600-92657600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:92649600-92665000	Weak transcription	Esophagus	oesophagus
36	chr15:92650800-92660400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:92651000-92656400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:92651600-92655800	Enhancers	Brain Hippocampus Middle	brain
39	chr15:92651800-92655800	Enhancers	Fetal Brain Female	brain
40	chr15:92652200-92656800	Enhancers	Brain Substantia Nigra	brain
41	chr15:92652400-92656000	Enhancers	Right Atrium	heart
42	chr15:92652400-92664200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:92652600-92655800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:92652600-92656000	Enhancers	Fetal Lung	lung
45	chr15:92652600-92656800	Enhancers	Brain Cingulate Gyrus	brain
46	chr15:92653000-92655600	Enhancers	Fetal Brain Male	brain
47	chr15:92653000-92656800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:92653000-92663400	Weak transcription	Primary T cells from cord blood	blood
49	chr15:92653000-92664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr15:92653200-92656800	Enhancers	Brain Anterior Caudate	brain

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