Variant report

Variant	rs16946382
Chromosome Location	chr15:92640933-92640934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:92640824-92641042	MCF10A-Er-Src	breast:	n/a	n/a
2	CTCF	chr15:92640864-92641173	T-47D	breast:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
3	CTCF	chr15:92640765-92641230	HepG2	liver:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
4	YY1	chr15:92640681-92641223	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr15:92640920-92641070	HL-60	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
6	CTCF	chr15:92640920-92641070	AG04450	lung:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
7	CTCF	chr15:92640900-92641050	GM12864	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
8	CTCF	chr15:92640920-92641070	GM12865	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
9	CTCF	chr15:92640880-92641123	HepG2	liver:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
10	YY1	chr15:92640876-92641096	GM12891	blood:	n/a	n/a
11	CTCF	chr15:92640900-92641050	HEEpiC	esophagus:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
12	CTCF	chr15:92640920-92641070	HMF	breast:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
13	MAFK	chr15:92640873-92641245	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr15:92640625-92641104	GM19240	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
15	CTCF	chr15:92640845-92641211	K562	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
16	CTCF	chr15:92640860-92641010	HAc	cerebellar:	n/a	chr15:92640990-92641008 chr15:92640991-92641007
17	TBL1XR1	chr15:92640930-92641111	K562	blood:	n/a	n/a
18	CTCF	chr15:92640861-92641139	Lung_OC	lung:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
19	BHLHE40	chr15:92640730-92641065	K562	blood:	n/a	n/a
20	MAX	chr15:92640570-92641089	H1-hESC	embryonic stem cell:	n/a	n/a
21	YY1	chr15:92640771-92641159	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr15:92640880-92641030	HMEC	breast:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
23	CTCF	chr15:92640860-92641010	NHDF-neo	bronchial:	n/a	chr15:92640990-92641008 chr15:92640991-92641007
24	RAD21	chr15:92640632-92641250	HCT-116	colon:	n/a	chr15:92640991-92641010
25	RAD21	chr15:92640790-92641208	HepG2	liver:	n/a	chr15:92640991-92641010
26	CTCF	chr15:92640920-92641070	HA-sp	spinal cord:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
27	RAD21	chr15:92640443-92641678	SK-N-SH	brain:	n/a	chr15:92641521-92641534 chr15:92640991-92641010 chr15:92641575-92641589
28	CTCF	chr15:92640848-92641121	T-47D	breast:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
29	CTCF	chr15:92640920-92641070	HPF	lung:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
30	CTCF	chr15:92640920-92641070	GM12878	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
31	CTCF	chr15:92640900-92641050	RPTEC	kidney:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
32	CTCF	chr15:92640920-92641070	AG09309	skin:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
33	CTCF	chr15:92640788-92641103	GM12892	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
34	CTCF	chr15:92640844-92641110	GM13977	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
35	CTCF	chr15:92640874-92641086	GM10248	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
36	CTCF	chr15:92640833-92641116	MCF-7	breast:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
37	CTCF	chr15:92640813-92641090	GM12891	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
38	RAD21	chr15:92640672-92641396	HCT-116	colon:	n/a	chr15:92640991-92641010
39	CTCF	chr15:92640810-92641133	HepG2	liver:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
40	CTCF	chr15:92640920-92641070	HEK293	kidney:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
41	RAD21	chr15:92640788-92641205	HepG2	liver:	n/a	chr15:92640991-92641010
42	CTCF	chr15:92640695-92641192	GM12878	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
43	YY1	chr15:92640810-92641071	GM12878	blood:	n/a	n/a
44	RAD21	chr15:92640825-92641160	K562	blood:	n/a	chr15:92640991-92641010
45	CTCF	chr15:92640814-92641175	SK-N-SH_RA	brain:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
46	CTCF	chr15:92640880-92641030	HEK293	kidney:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
47	CTCF	chr15:92640716-92641242	K562	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
48	CTCF	chr15:92640900-92641050	HMF	breast:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
49	CTCF	chr15:92640833-92641074	H1-hESC	embryonic stem cell:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
50	CTCF	chr15:92640920-92641070	HCT-116	colon:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92640503..92641006-chr15:93257734..93258635,2	K562	blood:

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16946365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17597560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17597608	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs6496879	1.00[JPT][hapmap]
rs6496891	0.89[YRI][hapmap]
rs6496896	1.00[JPT][hapmap]
rs7175217	1.00[JPT][hapmap]
rs73540490	0.87[ASN][1000 genomes]
rs8039722	1.00[JPT][hapmap]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:92627400-92641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:92630800-92641800	Weak transcription	NHEK	skin
4	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:92632600-92641200	Weak transcription	Thymus	Thymus
6	chr15:92635400-92641000	Weak transcription	HSMMtube	muscle
7	chr15:92636000-92648600	Weak transcription	Adipose Nuclei	Adipose
8	chr15:92637800-92641000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr15:92638000-92641200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr15:92638000-92641200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr15:92638000-92641400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr15:92638000-92641400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:92638000-92641600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:92638200-92641600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr15:92638200-92641600	Weak transcription	Ovary	ovary
16	chr15:92639400-92641400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr15:92639400-92641400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:92639400-92641600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:92639400-92643400	Weak transcription	Primary T cells from cord blood	blood
20	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:92639600-92641400	Enhancers	Primary hematopoietic stem cells	blood
22	chr15:92639600-92644800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:92639600-92645000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:92639800-92641000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr15:92639800-92641400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:92639800-92641800	Weak transcription	Aorta	Aorta
27	chr15:92639800-92643400	Weak transcription	GM12878-XiMat	blood
28	chr15:92640000-92642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:92640000-92652600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:92640200-92641200	Genic enhancers	Spleen	Spleen
31	chr15:92640400-92641000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr15:92640400-92641600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr15:92640400-92652400	Enhancers	Fetal Thymus	thymus
34	chr15:92640600-92641000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:92640600-92641000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:92640600-92641000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr15:92640600-92641000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr15:92640600-92641000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:92640600-92641000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:92640600-92641000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:92640600-92641000	Enhancers	Esophagus	oesophagus
42	chr15:92640600-92641000	Active TSS	Fetal Brain Female	brain
43	chr15:92640600-92641000	Enhancers	Fetal Muscle Trunk	muscle
44	chr15:92640600-92641000	Enhancers	Pancreas	Pancrea
45	chr15:92640600-92641000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr15:92640600-92641000	Genic enhancers	Right Ventricle	heart
47	chr15:92640600-92641000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr15:92640600-92641400	Enhancers	H9 Cell Line	embryonic stem cell
49	chr15:92640600-92641400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr15:92640600-92641400	Enhancers	Right Atrium	heart

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