Variant report

Variant	rs6496896
Chromosome Location	chr15:92680120-92680121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs16946365	1.00[JPT][hapmap]
rs16946382	1.00[JPT][hapmap]
rs17519116	1.00[JPT][hapmap]
rs17597560	1.00[JPT][hapmap]
rs17597608	1.00[JPT][hapmap]
rs2238351	0.80[AFR][1000 genomes]
rs2238357	0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs55956389	0.82[AMR][1000 genomes]
rs6496879	1.00[JPT][hapmap]
rs7175217	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8039722	1.00[CHB][hapmap];1.00[JPT][hapmap]

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:92648200-92692600	Weak transcription	NHLF	lung
3	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
6	chr15:92664000-92707000	Weak transcription	Liver	Liver
7	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
8	chr15:92665200-92689000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:92665800-92682400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:92665800-92686000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:92666000-92685600	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:92668200-92690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:92668600-92690800	Weak transcription	Brain Angular Gyrus	brain
15	chr15:92669600-92703000	Weak transcription	Brain Anterior Caudate	brain
16	chr15:92671600-92708000	Weak transcription	Gastric	stomach
17	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
18	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:92672000-92704200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:92672200-92685400	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:92672200-92695600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:92672200-92703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:92672400-92689600	Weak transcription	Fetal Stomach	stomach
24	chr15:92672600-92690200	Weak transcription	Spleen	Spleen
25	chr15:92672600-92691200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:92672800-92687000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:92672800-92687200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:92673400-92692600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:92674000-92685400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:92674000-92685600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:92674000-92687000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:92674000-92690000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:92674200-92684200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:92674400-92684000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:92674400-92684000	Weak transcription	NHEK	skin
36	chr15:92674600-92684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:92674600-92684000	Weak transcription	HMEC	breast
38	chr15:92674800-92707800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr15:92676600-92684200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:92676600-92689200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:92676600-92689800	Weak transcription	Primary T cells from cord blood	blood
42	chr15:92676800-92690200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:92677000-92680200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr15:92677400-92684200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:92678600-92680600	Weak transcription	Fetal Heart	heart
46	chr15:92678600-92689600	Weak transcription	Aorta	Aorta
47	chr15:92678600-92692400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:92678600-92701000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:92679000-92689600	Weak transcription	Esophagus	oesophagus
50	chr15:92679200-92684400	Weak transcription	Right Ventricle	heart

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