Variant report

Variant	rs16947046
Chromosome Location	chr12:117282718-117282719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117273632..117275666-chr12:117280641..117283007,2	K562	blood:

Variant related genes	Relation type
ENSG00000135119	Chromatin interaction

rs_ID	r²[population]
rs1051879	1.00[CEU][hapmap]
rs11068204	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11068208	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11068210	1.00[ASN][1000 genomes]
rs11068212	1.00[ASN][1000 genomes]
rs11068215	0.98[ASN][1000 genomes]
rs11068216	0.98[ASN][1000 genomes]
rs11068217	0.98[ASN][1000 genomes]
rs11068246	1.00[CEU][hapmap]
rs11068275	0.85[CHB][hapmap]
rs12316811	1.00[CEU][hapmap]
rs12321592	1.00[CEU][hapmap]
rs12578408	0.88[ASN][1000 genomes]
rs16947122	1.00[CEU][hapmap]
rs16947131	1.00[CEU][hapmap]
rs16947209	1.00[CEU][hapmap]
rs16947233	1.00[CEU][hapmap]
rs3748264	1.00[ASN][1000 genomes]
rs3809194	1.00[CHB][hapmap]
rs7133142	1.00[CEU][hapmap]
rs7133609	1.00[CEU][hapmap]
rs7305313	1.00[CEU][hapmap]
rs7314897	1.00[CEU][hapmap]
rs7963012	1.00[CEU][hapmap]
rs884273	1.00[CEU][hapmap]
rs9783443	1.00[ASN][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117257400-117287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:117258000-117289600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr12:117259400-117294400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:117263000-117296000	Weak transcription	Brain Angular Gyrus	brain
5	chr12:117263600-117284000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:117263800-117289600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:117269600-117291600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:117273800-117296800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:117274000-117290800	Weak transcription	Dnd41	blood
10	chr12:117274200-117289800	Weak transcription	Brain Germinal Matrix	brain
11	chr12:117274200-117289800	Weak transcription	Fetal Brain Female	brain
12	chr12:117274200-117290800	Weak transcription	Thymus	Thymus
13	chr12:117274400-117283200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:117274400-117288200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:117274400-117288800	Weak transcription	Fetal Thymus	thymus
16	chr12:117274400-117290200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr12:117274400-117291600	Weak transcription	Primary T cells from cord blood	blood
18	chr12:117275400-117287000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr12:117275600-117297600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr12:117276000-117296000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:117276600-117294600	Weak transcription	Primary B cells from cord blood	blood
22	chr12:117276800-117296200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:117281000-117287200	Weak transcription	Gastric	stomach
24	chr12:117282200-117289800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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