Variant report

Variant	rs3748264
Chromosome Location	chr12:117293803-117293804
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117255729..117257748-chr12:117292292..117294428,2	MCF-7	breast:
2	chr12:117265724..117267290-chr12:117293173..117295479,2	K562	blood:
3	chr12:117293621..117294235-chr15:90808416..90809266,2	Hela-S3	cervix:
4	chr12:117290976..117294327-chr12:117296336..117299387,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182768	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11068204	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068215	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068216	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068217	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12227855	0.93[EUR][1000 genomes]
rs12578408	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs16947046	1.00[ASN][1000 genomes]
rs2393108	0.92[AFR][1000 genomes]
rs3809194	0.93[EUR][1000 genomes]
rs73393789	0.93[EUR][1000 genomes]
rs7958222	1.00[EUR][1000 genomes]
rs7959242	0.93[EUR][1000 genomes]
rs9783443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117259400-117294400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117263000-117296000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117273800-117296800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:117275600-117297600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:117276000-117296000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:117276600-117294600	Weak transcription	Primary B cells from cord blood	blood
7	chr12:117276800-117296200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:117287600-117296200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:117289000-117294400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:117290200-117296000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:117290200-117296200	Weak transcription	Fetal Brain Female	brain
12	chr12:117290600-117296000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:117290600-117296000	Weak transcription	Brain Germinal Matrix	brain
14	chr12:117290600-117296000	Weak transcription	Fetal Brain Male	brain
15	chr12:117292400-117297800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:117293000-117294600	Enhancers	Hela-S3	cervix
17	chr12:117293400-117295400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr12:117293600-117294000	Enhancers	HSMMtube	muscle
19	chr12:117293600-117294200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:117293600-117294800	Enhancers	Placenta	Placenta
21	chr12:117293800-117295600	Weak transcription	Fetal Thymus	thymus

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