Variant report

Variant	rs7958222
Chromosome Location	chr12:117331525-117331526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11068204	1.00[EUR][1000 genomes]
rs11068208	1.00[EUR][1000 genomes]
rs11068210	1.00[EUR][1000 genomes]
rs11068212	1.00[EUR][1000 genomes]
rs11068215	1.00[EUR][1000 genomes]
rs11068216	1.00[EUR][1000 genomes]
rs11068217	1.00[EUR][1000 genomes]
rs12227855	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3748264	1.00[EUR][1000 genomes]
rs3809194	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73393789	0.93[EUR][1000 genomes]
rs7959242	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9783443	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117328600-117332800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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