Variant report

Variant	rs16950115
Chromosome Location	chr13:95420928-95420929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11840596	1.00[ASN][1000 genomes]
rs11840695	1.00[ASN][1000 genomes]
rs11841629	1.00[ASN][1000 genomes]
rs11841977	1.00[ASN][1000 genomes]
rs11841993	1.00[ASN][1000 genomes]
rs11843073	1.00[ASN][1000 genomes]
rs11843396	1.00[ASN][1000 genomes]
rs16950001	1.00[ASN][1000 genomes]
rs16950006	1.00[ASN][1000 genomes]
rs28376374	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41389945	1.00[ASN][1000 genomes]
rs55691901	1.00[ASN][1000 genomes]
rs55784615	1.00[ASN][1000 genomes]
rs55813732	1.00[ASN][1000 genomes]
rs55944290	1.00[ASN][1000 genomes]
rs56390739	1.00[ASN][1000 genomes]
rs57648108	1.00[ASN][1000 genomes]
rs58391484	1.00[ASN][1000 genomes]
rs61185933	1.00[ASN][1000 genomes]
rs61965578	1.00[ASN][1000 genomes]
rs6492745	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638373	1.00[ASN][1000 genomes]
rs72638377	1.00[ASN][1000 genomes]
rs72638380	1.00[ASN][1000 genomes]
rs72638383	1.00[ASN][1000 genomes]
rs72638386	1.00[ASN][1000 genomes]
rs72638401	1.00[ASN][1000 genomes]
rs7317507	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997429	1.00[CHB][hapmap]
rs9301994	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584248	1.00[ASN][1000 genomes]
rs9590059	1.00[ASN][1000 genomes]
rs9590075	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832687	chr13:95412811-95582161	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2763049	chr13:95414554-95445266	Enhancers Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95418600-95422200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:95419800-95421000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:95420800-95421000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:95420800-95421800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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