Variant report

Variant	rs57648108
Chromosome Location	chr13:95328589-95328590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95326845..95328787-chr13:95329550..95331542,2	MCF-7	breast:
2	chr13:95326796..95329231-chr13:95330284..95332050,2	K562	blood:
3	chr13:95327329..95329159-chr13:95333299..95335286,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11840596	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11840695	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841629	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841977	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841993	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843073	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843396	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950001	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950006	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950115	1.00[ASN][1000 genomes]
rs28376374	1.00[ASN][1000 genomes]
rs35629935	1.00[ASN][1000 genomes]
rs35973409	1.00[ASN][1000 genomes]
rs41389945	1.00[ASN][1000 genomes]
rs55691901	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55784615	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55813732	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55944290	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56348714	1.00[ASN][1000 genomes]
rs56372959	1.00[ASN][1000 genomes]
rs56390739	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58391484	1.00[ASN][1000 genomes]
rs61185933	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61965578	1.00[ASN][1000 genomes]
rs6492745	1.00[ASN][1000 genomes]
rs72638373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638377	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638380	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638383	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638386	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638401	1.00[ASN][1000 genomes]
rs7317507	1.00[ASN][1000 genomes]
rs73557817	1.00[ASN][1000 genomes]
rs9301994	1.00[ASN][1000 genomes]
rs9584248	1.00[ASN][1000 genomes]
rs9590059	1.00[ASN][1000 genomes]
rs9590075	1.00[ASN][1000 genomes]
rs9590076	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95325600-95330600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:95325800-95330600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:95326400-95335600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:95326600-95329000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:95327000-95329800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:95327000-95329800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:95327200-95335600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:95327600-95329800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:95327600-95330000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:95327600-95330200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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