Variant report
| Variant | rs9590059 |
|---|---|
| Chromosome Location | chr13:95378676-95378677 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11840596 | 1.00[ASN][1000 genomes] |
| rs11840695 | 1.00[ASN][1000 genomes] |
| rs11841629 | 1.00[ASN][1000 genomes] |
| rs11841977 | 1.00[ASN][1000 genomes] |
| rs11841993 | 1.00[ASN][1000 genomes] |
| rs11843073 | 1.00[ASN][1000 genomes] |
| rs11843396 | 1.00[ASN][1000 genomes] |
| rs16950001 | 1.00[ASN][1000 genomes] |
| rs16950006 | 1.00[ASN][1000 genomes] |
| rs16950115 | 1.00[ASN][1000 genomes] |
| rs28376374 | 1.00[ASN][1000 genomes] |
| rs41389945 | 1.00[ASN][1000 genomes] |
| rs55691901 | 1.00[ASN][1000 genomes] |
| rs55784615 | 1.00[ASN][1000 genomes] |
| rs55813732 | 1.00[ASN][1000 genomes] |
| rs55944290 | 1.00[ASN][1000 genomes] |
| rs56390739 | 1.00[ASN][1000 genomes] |
| rs57648108 | 1.00[ASN][1000 genomes] |
| rs58391484 | 1.00[ASN][1000 genomes] |
| rs61185933 | 1.00[ASN][1000 genomes] |
| rs61965578 | 1.00[ASN][1000 genomes] |
| rs6492745 | 1.00[ASN][1000 genomes] |
| rs72638373 | 1.00[ASN][1000 genomes] |
| rs72638377 | 1.00[ASN][1000 genomes] |
| rs72638380 | 1.00[ASN][1000 genomes] |
| rs72638383 | 1.00[ASN][1000 genomes] |
| rs72638386 | 1.00[ASN][1000 genomes] |
| rs72638401 | 1.00[ASN][1000 genomes] |
| rs7317507 | 1.00[ASN][1000 genomes] |
| rs7997429 | 1.00[CHB][hapmap] |
| rs9301994 | 1.00[ASN][1000 genomes] |
| rs9584248 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9590075 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs9590076 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34004 | chr13:94906537-95392644 | Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 2 | nsv832686 | chr13:95206742-95400992 | Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054343 | chr13:95362727-95395486 | Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:95377600-95379200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr13:95378200-95379200 | Strong transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
