Variant report
| Variant | rs9301994 |
|---|---|
| Chromosome Location | chr13:95400834-95400835 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:95382182..95383741-chr13:95400330..95402335,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11840596 | 1.00[ASN][1000 genomes] |
| rs11840695 | 1.00[ASN][1000 genomes] |
| rs11841629 | 1.00[ASN][1000 genomes] |
| rs11841977 | 1.00[ASN][1000 genomes] |
| rs11841993 | 1.00[ASN][1000 genomes] |
| rs11843073 | 1.00[ASN][1000 genomes] |
| rs11843396 | 1.00[ASN][1000 genomes] |
| rs16950001 | 1.00[ASN][1000 genomes] |
| rs16950006 | 1.00[ASN][1000 genomes] |
| rs16950115 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28376374 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41389945 | 1.00[ASN][1000 genomes] |
| rs55691901 | 1.00[ASN][1000 genomes] |
| rs55784615 | 1.00[ASN][1000 genomes] |
| rs55813732 | 1.00[ASN][1000 genomes] |
| rs55944290 | 1.00[ASN][1000 genomes] |
| rs56390739 | 1.00[ASN][1000 genomes] |
| rs57648108 | 1.00[ASN][1000 genomes] |
| rs58391484 | 1.00[ASN][1000 genomes] |
| rs61185933 | 1.00[ASN][1000 genomes] |
| rs61965578 | 1.00[ASN][1000 genomes] |
| rs6492745 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72638373 | 1.00[ASN][1000 genomes] |
| rs72638377 | 1.00[ASN][1000 genomes] |
| rs72638380 | 1.00[ASN][1000 genomes] |
| rs72638383 | 1.00[ASN][1000 genomes] |
| rs72638386 | 1.00[ASN][1000 genomes] |
| rs72638401 | 1.00[ASN][1000 genomes] |
| rs7317507 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7997429 | 1.00[CHB][hapmap] |
| rs9584248 | 1.00[ASN][1000 genomes] |
| rs9590059 | 1.00[ASN][1000 genomes] |
| rs9590075 | 1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9590076 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832686 | chr13:95206742-95400992 | Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:95400800-95401800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
